MeDuSA

MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk …

Stars

25

Forks

3

Language

R

Last Updated

Nov 10, 2023

Similar Repos
Repo Language Stars Description Updated At
R 2 Ensemble Deconvolution to robustly estimate cellular fractions from bulk omics data Jun 17, 2022
R 91 Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets Apr 11, 2023
Shell 3 ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell Jun 07, 2022
Python 20 Bulk RNA-seq analysis. Aug 07, 2022
Python 2 Prediction of RNA splicing kinetics in scRNA-seq data Apr 10, 2023
HTML 36 Introduction to bulk RNA-seq Aug 08, 2022
Shell 4 RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex Oct 14, 2021
Jupyter Notebook 5 Inferring cellular trajectories from scRNA-seq using Pseudocell Tracer Mar 08, 2023
R 6 One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data Aug 10, 2022
Python 6 Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor Jul 28, 2022
R 2 Analysis of LPS (bulk) RNA-seq data from Chevrier lab. May 16, 2023
None 2 Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor Jun 10, 2023
None 18 List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures Jul 25, 2022
Python 3 Snakemake workflow to analyze bulk RNA-seq Nov 08, 2022
Python 47 Pileup biallelic SNPs from single-cell and bulk RNA-seq data Aug 11, 2022
MATLAB 3 Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE) Oct 14, 2020
Shell 2 Hashed scRNA-seq data processing pipeline Mar 30, 2022
R 18 scRNA-seq data visualization from scrattch Jun 21, 2022
Mathematica 17 A library for the deconvolution of bulk cell samples using single-cell RNA expression data. Feb 15, 2023
Shell 9 Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq … Sep 14, 2022
R 2 Collection of Bulk RNA-Seq Experiments With Many Replicates Jan 18, 2021
R 9 A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq) May 23, 2022
Nextflow 18 Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq Apr 04, 2023
R 7 A clusterability measure for scRNA-seq data. May 31, 2022
HTML 14 Marker gene selection from scRNA-seq data May 10, 2022
R 2 scRNA-seq data explorer based on Shiny Mar 23, 2022
R 9 A pipeline for scRNA-seq data analysis Apr 04, 2023
Python 4 Cell cycle classifier for scRNA-seq data. Feb 25, 2022
Python 3 scNavigator processing pipeline for scRNA-seq data Aug 16, 2023
R 2 Interpretation of RNA-seq data Apr 04, 2022
HTML 34 Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution Aug 17, 2022
Python 5 snakemake workflow for bulk RNA-seq workflow using STAR-edgeR Oct 25, 2022
Perl 5 UROBORUS: circular RNA identification from RNA-Seq data Jun 16, 2020
Groovy 6 Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data Dec 14, 2023
R 14 Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks Oct 28, 2022
Python 8 The gEAR Portal was created as a data archive and viewer for gene expression data … Jan 17, 2023
Python 3 Bench-marking classification tools for scRNA-seq data Jun 12, 2022
R 8 Integrative analysis for scTCR- and scRNA-seq data Nov 04, 2022
Python 217 Deep count autoencoder for denoising scRNA-seq data Apr 04, 2023
R 8 Snakemake workflow to benchmark scRNA-seq data simulators Feb 11, 2023
R 83 Accurate and robust imputation of scRNA-seq data Apr 10, 2023
Python 166 Bench-marking classification tools for scRNA-seq data May 15, 2023
R 10 Processing scRNA-seq data with kallisto|bustools pipeline Dec 08, 2022
R 2 Shiny app to explore Clytia scRNA-seq data Oct 06, 2022
Jupyter Notebook 2 Single nuclei RNA-seq oxytocin data Mar 05, 2022
HTML 2 Cluster single cell RNA-seq data Sep 30, 2020
CSS 20 Workshop • Analysis of RNA-seq data Jul 18, 2022
Python 3 Find circRNAs in RNA-seq data. Feb 02, 2022
Python 12 Find circRNAs in RNA-seq data. Jul 12, 2022
Jupyter Notebook 9 Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA … Apr 07, 2023