Stars
20
Forks
5
Language
Python
Last Updated
Oct 09, 2023
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
C++ | 88 | A library for running k-mers based GWAS | Apr 11, 2023 | |
Jupyter Notebook | 9 | Modular snakemake workflow for assembly-based metagenomics | Dec 06, 2022 | |
Python | 12 | Snakemake workflow for neoantigen prediction | Apr 28, 2023 | |
Python | 2 | Snakemake Workflow For WGBS Data | Jan 10, 2022 | |
R | 4 | RNA-Seq Workflow Based on Snakemake and Conda | May 28, 2020 | |
Python | 11 | Ancient microbiome snakemake workflow | Mar 15, 2023 | |
Python | 4 | Snakemake-based workflow for generating artificial genomes with structural variants | Feb 03, 2022 | |
Python | 42 | Snakemake-based workflow for detecting structural variants in WGS data | Jul 31, 2022 | |
Python | 8 | A snakemake workflow for metagenomic projects | Apr 01, 2022 | |
Python | 2 | Snakemake workflow for comprehensive ONT analysis | Mar 31, 2023 | |
Python | 2 | A Snakemake workflow for fungal metatranscriptomics | Feb 15, 2022 | |
Python | 3 | Snakemake workflow for evaluation of assemblies | Mar 07, 2022 | |
Python | 8 | Snakemake workflow for the vg toolkit. | Apr 25, 2023 | |
Python | 2 | A snakemake workflow for using tsinfer | Oct 30, 2023 | |
Python | 2 | Snakemake module for performing Mitochondrial short variant discovery | Jan 15, 2023 | |
Python | 4 | snakemake workflow for random forest based feature selection on chromHMM data | Sep 10, 2022 | |
Python | 3 | Small snakemake best practice workflow | Mar 18, 2022 | |
Python | 5 | snakemake workflow for bulk RNA-seq workflow using STAR-edgeR | Oct 25, 2022 | |
Python | 14 | snakemake workflow for post-processing scATACseq data | Oct 04, 2022 | |
Python | 2 | A snakemake workflow for assembly with HiFi | May 01, 2024 | |
Python | 9 | A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, … | May 27, 2023 | |
R | 3 | Pipeline for performing GWAS mappings with C. elegans phenotype data | Jul 21, 2020 | |
R | 3 | R package for performing Mendelian randomization with GWAS summary data | Mar 29, 2023 | |
Python | 4 | snakemake workflow comparing Genrich and MACS2 | Nov 09, 2020 | |
Python | 5 | Snakemake workflow to call germline variant | Oct 15, 2019 | |
Python | 3 | A small ncRNA workflow in Snakemake. | Dec 07, 2022 | |
Python | 3 | Some NGS workflow created by snakemake | Apr 21, 2023 | |
Python | 3 | A Snakemake workflow for germline variant burden analyses. | Mar 23, 2022 | |
Shell | 41 | A Github action for running a Snakemake workflow | Jun 15, 2022 | |
Python | 7 | Snakemake workflow for comparison of differential abundance ranks | Aug 14, 2022 | |
Python | 8 | A Snakemake workflow for Fermi-LAT data reduction | Oct 27, 2023 | |
R | 4 | A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered … | Apr 07, 2023 | |
Python | 3 | Snakemake workflow to analyze bulk RNA-seq | Nov 08, 2022 | |
R | 3 | Snakemake workflow for 10X Genomics WGS analysis using TitanCNA | Apr 20, 2022 | |
Python | 5 | A repo for the Twist HiFi capture/snakemake workflow | Apr 20, 2023 | |
R | 6 | A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by … | Mar 09, 2023 | |
Python | 2 | Snakemake BIDS app for denoising fmriprep, uses the snakebids package for running snakemake workflow as … | Jul 18, 2021 | |
Python | 4 | Snakemake workflow implementing Accel Amplicon (Swift) trimming guidelines. | Jun 25, 2019 | |
R | 8 | Snakemake workflow to benchmark scRNA-seq data simulators | Feb 11, 2023 | |
Python | 5 | Snakemake workflow for functional analysis of metagenomic WGS read data. | Mar 12, 2022 | |
Python | 5 | Snakemake workflow for modelling-to-generate-alternatives with PyPSA-Eur | Jun 03, 2022 | |
Python | 3 | A Snakemake workflow for large-scale SARS-CoV-2 analyses. | Mar 23, 2022 | |
Python | 5 | Snakemake workflow for somatic mutation detection without matched normal samples | May 14, 2023 | |
Python | 4 | A Docker based workflow for performing a Plink/fastStructure analysis from Excel data. | Nov 23, 2021 | |
Python | 6 | Demos a Snakemake workflow to classify enhancer regions based on publicly available chromatin marks. | Jan 01, 2019 | |
Nextflow | 2 | Family-based GWAS analysis pipeline | Jul 07, 2020 | |
Python | 2 | Reproducibility and package management : workflow languages (CWL, Snakemake, Conda). | Aug 03, 2022 | |
Python | 199 | This Snakemake pipeline implements the GATK best-practices workflow | Apr 23, 2023 | |
Python | 29 | Amplicon sequence processing workflow using QIIME 2 and Snakemake | Apr 01, 2023 | |
Python | 5 | A web interface for running PyPSA scenarios using the snakemake workflow | Jun 25, 2022 |